Commits

Author Commit Message Labels Comments Date
opticall
opticall update, increased precision for larger sample sizes and increased numbers of batches. fixed bug in inblock and minor bug in hwe-p value calculations
opticall
opticall 0.6.5 - fixed snpcount when using inblock
opticall
revised X chromosome inference to allow male hets
opticall
changed -noblank default option to -blank
opticall
fixed infinite loop NAN bug
opticall
fixed bug with NAN rows
opticall
opticall version 0.5.5, adds X,Y,MT and multiple batch calling
opticall
added option to alter meanintensity standard deviation limit
opticall
added mean intensity identification and stop functionality
opticall
addition of example info file to codebase
opticall
minor bugfix in header of calls/probs file
opticall
added compiler optimization flag -O3 to Makefile, significant speed increase
opticall
opticall version 0.3.0, more features, including outlier removal, and a little quicker
opticall
changed outlier threshold on blocking to 5 sds, added option to change hwep threshold for rescue
opticall
fixed initial blocking bug when dataset has outliers
opticall
updated version
opticall
update fixing bug when all internsities for a SNP are zero
opticall
fixed bug with initial sampling issues on block step
opticall
handled case with all NaN entries for SNP
opticall
fixed segfault error in rescue step
opticall
made file parsing more robust by allowing consecutive whitespace using the ecompress option on the split method
opticall
made file parsing more robust by stripping trailing whitespace
opticall
slight alteration of debug output
opticall
fixed bug with filtered data in rescue step
opticall
made the intensity file reader able to handle spaces and tabs using boost split
opticall
Initial commit of all files to the repository.