Author Commit Message Labels Comments Date
opticall avataropticall
opticall update, increased precision for larger sample sizes and increased numbers of batches. fixed bug in inblock and minor bug in hwe-p value calculations
opticall avataropticall
opticall 0.6.5 - fixed snpcount when using inblock
opticall avataropticall
revised X chromosome inference to allow male hets
opticall avataropticall
changed -noblank default option to -blank
opticall avataropticall
fixed infinite loop NAN bug
opticall avataropticall
fixed bug with NAN rows
opticall avataropticall
opticall version 0.5.5, adds X,Y,MT and multiple batch calling
opticall avataropticall
added option to alter meanintensity standard deviation limit
opticall avataropticall
added mean intensity identification and stop functionality
opticall avataropticall
addition of example info file to codebase
opticall avataropticall
minor bugfix in header of calls/probs file
opticall avataropticall
added compiler optimization flag -O3 to Makefile, significant speed increase
opticall avataropticall
opticall version 0.3.0, more features, including outlier removal, and a little quicker
opticall avataropticall
changed outlier threshold on blocking to 5 sds, added option to change hwep threshold for rescue
opticall avataropticall
fixed initial blocking bug when dataset has outliers
opticall avataropticall
updated version
opticall avataropticall
update fixing bug when all internsities for a SNP are zero
opticall avataropticall
fixed bug with initial sampling issues on block step
opticall avataropticall
handled case with all NaN entries for SNP
opticall avataropticall
fixed segfault error in rescue step
opticall avataropticall
made file parsing more robust by allowing consecutive whitespace using the ecompress option on the split method
opticall avataropticall
made file parsing more robust by stripping trailing whitespace
opticall avataropticall
slight alteration of debug output
opticall avataropticall
fixed bug with filtered data in rescue step
opticall avataropticall
made the intensity file reader able to handle spaces and tabs using boost split
opticall avataropticall
Initial commit of all files to the repository.
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