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 rsid<tab>rscoord<tab>allelesAB<tab>id1A<tab>id1B<tab>id2A<tab>id2B etc.
 
-where id1A is the allele A intensity value for sample with id id1, and id1B is the allele B intensity value for sample 1. The algorithm is known to perform well with Illumina normalized intensities. Any missing intensities should be input as NaN for both the A and B alleles.
+where id1A is the allele A intensity value for sample 1, and id1B is the allele B intensity value for sample 1. The algorithm is known to perform well with Illumina normalized intensities. Any missing intensities should be input as NaN for both the A and B alleles.
 
 The first line of the file should also be a header line of the form:
 
 SNP<tab>Coor<tab>Alleles<tab>sample1idA<tab>sample1idB<tab>sample2idA<tab>sample2idB etc.
 
-where sample1_id is your identifier for the first sample, and the A, B correspond to the different allele intensities. 
+where sample1id is your identifier for the first sample, and the A, B correspond to the different allele intensities. 
 
 An example input intensity file is provided with the program for your information.
 
 
 ==== PROVIDING SAMPLE INFORMATION & CALLING SUBSETS ====
 
+-info FILE
+
+The info file specifies sample genders and also whether samples should be excluded from calling. It is whitespace separated and the format is:
+
+sampleid gender excludeflag
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+with a line for all the samples in the intensity data supplied
+
+sampleid should match the sampleid given in the header of the intensity file.
+gender is either 1 for male or 2 for female - and any other integer value is considered as unknown
+excludeflag is 1 if the sample is to be excluded from calling, or zero if it is to be included in calling.
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