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 -hwep NEW_VALUE
 
-By default this is 1e-15. This is the threshold Hardy-Weinberg Equilibrium (HWE)  p-value at which optiCall determines a clustering has failed. If the HWE p-value is less than this threshold optiCall will first attempt a rescue clustering for the SNP, and if that fails, call all genotypes at that SNP NN (use the -noblank option to stop this). To get the best calls, we recommend you set this value to the HWE p-value QC threshold for your study
+By default this is 1e-15. This is the threshold Hardy-Weinberg Equilibrium (HWE)  p-value at which optiCall determines a clustering has failed. If the HWE p-value is less than this threshold optiCall will first attempt a rescue clustering for the SNP, and if that fails, call all genotypes at that SNP NN (use the -noblank option to stop this). To get the best calls, we recommend you set this value to the HWE p-value QC threshold for your study so that any SNPs that may be potentially lost could be fixed by the rescue clustering. If you're not sure about your QC thresholds, or want faster execution, the default will suffice.
 
 -minp NEW_VALUE