Feature/revision of dynamic range in fork

Cleaned up (at least to some extent) version of the code used in the publication “The effect of dynamic range alterations in the estimation of contrast”.

• Preliminary commit of image calibration

• Minor cleanup

• Updated MV and EBMV with removing the reference to transmit and receive apod since this is allready in the object.

• Save calibrated images

• Preliminary commit of dynamic range test.

• Updated to include calibration

• Updated dynamic range test

• Removed normalization on max of regression in the plot.

• Updating simulation to be more similar to experimental data

• Run full simulation

• Updated filename

• Making sure we run full simulation

• Making simulation with 1.66 dB/mm gradient

• Trying new simulation

• Updated phantom, correct this time...

• Change filename

• Less scatterers

• 2 dB/mm gradient

• More scatteres and stronger single point scatterers.

• Corrected wrong parameter

• Remove receive and transmit variables from the GCR postprocess, they are defined in the mother class.

• Expanding definition of GLT

• Updated ground truth experimental slightly

• Working with new updated simulation more similar to the experimental one

• Running simulation with 1.8 db/mm with few scatterers

• More scatterers on V5

• Preliminary commit before stripping code down

• Only axial gradient simulation

• Updated variable name

• Simulation full gradient field of view

• Commiting all code before cleaning up the code.

• Adding high pass filter to tools

• Corrected typo in folder name

• Removed old version of this file.

• Removed old file

• Removing old code

• Update calibration code

• Removed old code

• Updated code to published version

• The scripts published on the website

• Cleaning up code

• Uncommented some code

• Cleaning up code!