This is a library for Bioinformatics, mostly centered on the BAM file
format for Next Generation Sequencing data. A number of tools built on
top of it can be found in the
biohazard-tools repository at
Biohazard uses Cabal, the standard installation mechanism for Haskell.
To install, follow these steps:
- install GHC (see http://haskell.org/ghc, version 8.4.4 is recommended) and cabal-install (see http://haskell.org/cabal, version 126.96.36.199 is recommended),
cabal update(takes a while to download the current package list),
git clone https://firstname.lastname@example.org/ustenzel/biohazard.git
cabal install biohazard/(takes even longer).
Sometimes, repeated installations and re-installations can result in a thoroughly unusable state of the Cabal package collection. If you get error messages that just don't make sense anymore, please refer to http://www.vex.net/~trebla/haskell/sicp.xhtml; among other useful things, it tells you how to wipe a package database without causing more destruction.