This task allows you to read the binary GLF files produced by ATLAS task glf.
- glf.gz file
Printed to screen. The columns are: chromosome, position, maximum phred scaled genotype likelihood, depth, RMS mapping quality, the 10 phred scaled genotype likelihoods
./atlas task=printGLF glf=example.glf.gz
Engine parameters that are common to all tasks can be found here.