Fst (task Fst)

To calculate the total Fst from your input data, you can use the task=Fst. You have to specify on the command line the input file assigned to the argument data. The output file “Fst.txt” shows in the first column the total heterozygosity Ht, in the second column the mean heterozygosity across subpopulations Hs and in the third column the value of Fst. Click here to check how Fst, Ht and Hs are calculated.

Example:

./Flink task=Fst data=Flink_simulations.txt