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Welcome to the new distribution site of ApicoAP software!

Please note that our older site will no longer be maintained.

In order to access the previous and the latest versions of ApicoAP software, please follow the Downloads link.

In order to access the user manuals, please follow the Wiki link. Here are some direct links to user manuals:

ApicoAP (version 1) User Manual

ApicoAP (version 2-3) User Manual

Instructions for converting ApicoAP_GUI.py to MAC OS X compatible .app file

Please report any bugs you encountered using the software to gokcen.cilingir@gmail.com

Please check out the info explaining what to do when ApicoAP tool gives an error saying "SignalP server is not responding".

You can find more information over the method and the software at the following reference:

Cilingir, Gokcen, Shira L. Broschat, and Audrey OT Lau. "ApicoAP: the first computational model for identifying apicoplast-targeted proteins in multiple species of Apicomplexa." PloS one 7.5 (2012): e36598-e36598

If you're using version 3 (latest), please also cite:

Cilingir, Gokcen, and Shira L. Broschat. "Automated Training for Algorithms That Learn from Genomic Data." BioMed research international 2015 (2015).