- edited description
mss 1.8.2 cannot be started from menu entry (linux)
Issue #442
on hold
The mss program cannot be started from the application menu.
Error in log:
Traceback (most recent call last):
File "/home/icg173/anaconda3/envs/mss-1.8.2/bin/mss", line 7, in <module>
from mslib.msui.mss_pyui import main
File "/home/icg173/anaconda3/envs/mss-1.8.2/lib/python3.6/site-packages/mslib/msui/mss_pyui.
py", line 49, in <module>
from mslib.msui.mss_qt import ui_mainwindow as ui
File "/home/icg173/anaconda3/envs/mss-1.8.2/lib/python3.6/site-packages/mslib/msui/mss_qt.py
", line 40, in <module>
from mslib.utils import config_loader, FatalUserError
File "/home/icg173/anaconda3/envs/mss-1.8.2/lib/python3.6/site-packages/mslib/utils.py", lin
e 45, in <module>
import mpl_toolkits.basemap.pyproj as pyproj
File "/home/icg173/anaconda3/envs/mss-1.8.2/lib/python3.6/site-packages/mpl_toolkits/basemap
/__init__.py", line 155, in <module>
pyproj_datadir = os.environ['PROJ_LIB']
File "/home/icg173/anaconda3/envs/mss-1.8.2/lib/python3.6/os.py", line 669, in __getitem__
raise KeyError(key) from None
KeyError: 'PROJ_LIB'
The program can be started from the terminal after activating the environment into which it was installed.
This is the list of installed packages:
icg173@icg1705 ~ % conda list
# packages in environment at /home/icg173/anaconda3/envs/mss-1.8.2:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main
apipkg 1.5 py36_0
appdirs 1.4.3 py36h28b3542_0
argcomplete 1.10.0 py36_0
asn1crypto 0.24.0 py36_0
astropy 3.2.1 py36h7b6447c_0
atomicwrites 1.3.0 py36_1
attrs 19.1.0 py36_1
basemap 1.2.0 py36h705c2d8_0
bcrypt 3.1.6 py36h7b6447c_0
beautifulsoup4 4.7.1 py36_1
blas 1.0 mkl
bzip2 1.0.8 h7b6447c_0
ca-certificates 2019.5.15 1
certifi 2019.6.16 py36_1
cffi 1.12.3 py36h2e261b9_0
cftime 1.0.3.4 py36hdd07704_1001
chameleon 3.6 py36_0
chardet 3.0.4 py36_1003
click 7.0 py36_0
cryptography 2.7 py36h1ba5d50_0
curl 7.65.2 hbc83047_0
cycler 0.10.0 py36_0
dbus 1.13.6 h746ee38_0
execnet 1.6.1 py_0
expat 2.2.6 he6710b0_0
flask 1.1.1 py_0
flask-httpauth 3.3.0 py_0 conda-forge
fontconfig 2.13.0 h9420a91_0
freetype 2.9.1 h8a8886c_1
fs 2.4.10 py36_0 conda-forge
fs.sshfs 0.6.1 py36_0 conda-forge
fs.webdavfs 0.3.7 py36_0 conda-forge
fs_filepicker 0.3.7 py36_2 conda-forge
furl 2.0.0 py36_0
future 0.17.1 py36_0
geos 3.6.2 heeff764_2
glib 2.56.2 hd408876_0
gst-plugins-base 1.14.0 hbbd80ab_1
gstreamer 1.14.0 hb453b48_1
hdf4 4.2.13 h3ca952b_2
hdf5 1.10.4 hb1b8bf9_0
html5lib 1.0.1 py_0
humanfriendly 4.18 py36_0
icu 58.2 h9c2bf20_1
idna 2.8 py36_0
importlib_metadata 0.19 py36_0
intel-openmp 2019.4 243
isodate 0.6.0 py_1
itsdangerous 1.1.0 py36_0
jinja2 2.10.1 py36_0
jpeg 9b h024ee3a_2
jplephem 2.9 pyh11f86e8_0 conda-forge
kiwisolver 1.1.0 py36he6710b0_0
krb5 1.16.1 h173b8e3_7
libcurl 7.65.2 h20c2e04_0
libedit 3.1.20181209 hc058e9b_0
libffi 3.2.1 hd88cf55_4
libgcc-ng 9.1.0 hdf63c60_0
libgfortran-ng 7.3.0 hdf63c60_0
libnetcdf 4.6.1 h11d0813_2
libpng 1.6.37 hbc83047_0
libsodium 1.0.16 h1bed415_0
libssh2 1.8.2 h1ba5d50_0
libstdcxx-ng 9.1.0 hdf63c60_0
libtiff 4.0.10 h2733197_2
libuuid 1.0.3 h1bed415_2
libxcb 1.13 h1bed415_1
libxml2 2.9.9 hea5a465_1
libxslt 1.1.33 h7d1a2b0_0
lxml 4.3.4 py36hefd8a0e_0
markupsafe 1.1.1 py36h7b6447c_0
matplotlib 3.0.2 py36h5429711_0
mkl 2019.4 243
mkl-service 2.0.2 py36h7b6447c_0
mkl_fft 1.0.12 py36ha843d7b_0
mkl_random 1.0.2 py36hd81dba3_0
more-itertools 7.2.0 py36_0
mss 1.8.2 py36_0 conda-forge
ncurses 6.1 he6710b0_1
netcdf4 1.4.2 py36h808af73_0
numpy 1.16.4 py36h7e9f1db_0
numpy-base 1.16.4 py36hde5b4d6_0
olefile 0.46 py36_0
openssl 1.1.1c h7b6447c_1
orderedmultidict 1.0.1 py36_0
owslib 0.18.0 py_0
packaging 19.0 py36_0
paramiko 2.4.2 py36_0
pcre 8.43 he6710b0_0
pillow 5.4.1 py36h34e0f95_0
pip 19.1.1 py36_0
pluggy 0.12.0 py_0
proj4 5.2.0 he6710b0_1
psutil 5.6.3 py36h7b6447c_0
py 1.8.0 py36_0
pyasn1 0.4.6 py_0
pycparser 2.19 py36_0
pynacl 1.3.0 py36h7b6447c_0
pyopenssl 19.0.0 py36_0
pyparsing 2.4.0 py_0
pyproj 1.9.6 py36h14380d9_0
pyqt 5.9.2 py36h05f1152_2
pyshp 2.1.0 py_0
pysocks 1.7.0 py36_0
pytest 5.0.1 py36_0
pytest-arraydiff 0.3 py36h39e3cac_0
pytest-astropy 0.5.0 py36_0
pytest-doctestplus 0.3.0 py36_0
pytest-openfiles 0.3.2 py36_0
pytest-remotedata 0.3.2 py36_0
python 3.6.9 h265db76_0
python-dateutil 2.8.0 py36_0
pytz 2019.1 py_0
qt 5.9.7 h5867ecd_1
readline 7.0 h7b6447c_5
requests 2.22.0 py36_0
scipy 1.3.0 py36h7c811a0_0
setuptools 41.0.1 py36_0
sgp4 1.4 pyh24bf2e0_3 conda-forge
sip 4.19.8 py36hf484d3e_0
six 1.12.0 py36_0
skyfield 1.11 py_0 conda-forge
soupsieve 1.9.2 py36_0
sqlite 3.29.0 h7b6447c_0
tk 8.6.8 hbc83047_0
tornado 6.0.3 py36h7b6447c_0
unicodecsv 0.14.1 py36_0
urllib3 1.24.2 py36_0
wcwidth 0.1.7 py36_0
webdavclient2 0.1.1 py_0 conda-forge
webencodings 0.5.1 py36_1
werkzeug 0.15.4 py_0
wheel 0.33.4 py36_0
xz 5.2.4 h14c3975_4
zipp 0.5.2 py_0
zlib 1.2.11 h7b6447c_3
zstd 1.3.7 h0b5b093_0
In contrast to mss-1.8.1, this version uses again python-3.6.
I “fixed” this by exchanging the access to PROJ_LIB by
pyproj_datadir = os.getenv('PROJ_LIB', pyproj.datadir.pyproj_datadir)
I also tried out this
import os
if "PROJ_LIB" not in os.environ:
import pyproj
os.environ["PROJ_LIB"] = pyproj.datadir.pyproj_datadir
at the beginning of mss_pyui.py, and this also worked. Requiring this variable to be set is really unbelievably annoying of this anaconda package.
Comments (12)
-
reporter
-
This is since May when I removed our patch files. I create a -1 and forward that problem to Filipe
https://github.com/conda-forge/mss-feedstock/pull/61
likly this problem hits any none env start.
-
a python-3.7 package was builded too.
https://anaconda.org/conda-forge/mss/files -
fixed by mss-1.8.2-1 patched on feedstock https://github.com/conda-forge/mss-feedstock/blob/master/recipe/meta.yaml
-
- changed milestone to upstream fix needed
until we have a fix in conda itselfs we patch this during the build process
-
conda create -n mss1821py3 mss python==3.7
The python version is a different issue, we may be split this into a new issue. I guess the answer is somewhere in the users available specs. This is a hint only, that we may be find a solution which can be added to the docs.
conda create -n mss1821py3 mss python==3.7 added / updated specs: - mss - python==3.7 The following packages will be downloaded: package | build ---------------------------|----------------- cftime-1.0.3.4 |py37hdd07704_1001 310 KB curl-7.61.0 | h84994c4_0 131 KB hdf5-1.10.2 | hba1933b_1 3.8 MB libcurl-7.61.0 | h1ad7b7a_0 355 KB libnetcdf-4.6.1 | h10edf3e_1 833 KB mkl-service-2.0.2 | py37h7b6447c_0 65 KB mkl_fft-1.0.14 | py37ha843d7b_0 172 KB more-itertools-7.2.0 | py37_0 99 KB mss-1.8.2 | py37_1 557 KB conda-forge netcdf4-1.4.2 | py37h4b4f87f_0 478 KB packaging-19.1 | py37_0 46 KB pytest-remotedata-0.3.2 | py37_0 15 KB python-3.7.0 | h6e4f718_3 27.2 MB scipy-1.3.0 | py37h7c811a0_0 18.0 MB ------------------------------------------------------------ Total: 52.0 MB The following NEW packages will be INSTALLED: _libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main apipkg pkgs/main/linux-64::apipkg-1.5-py37_0 appdirs pkgs/main/linux-64::appdirs-1.4.3-py37h28b3542_0 argcomplete pkgs/main/linux-64::argcomplete-1.10.0-py37_0 asn1crypto pkgs/main/linux-64::asn1crypto-0.24.0-py37_0 astropy pkgs/main/linux-64::astropy-3.2.1-py37h7b6447c_0 atomicwrites pkgs/main/linux-64::atomicwrites-1.3.0-py37_1 attrs pkgs/main/linux-64::attrs-19.1.0-py37_1 basemap pkgs/main/linux-64::basemap-1.2.0-py37h705c2d8_0 bcrypt pkgs/main/linux-64::bcrypt-3.1.6-py37h7b6447c_0 beautifulsoup4 pkgs/main/linux-64::beautifulsoup4-4.7.1-py37_1 blas pkgs/main/linux-64::blas-1.0-mkl bzip2 pkgs/main/linux-64::bzip2-1.0.8-h7b6447c_0 ca-certificates pkgs/main/linux-64::ca-certificates-2019.5.15-1 cached-property pkgs/main/linux-64::cached-property-1.5.1-py37_0 certifi pkgs/main/linux-64::certifi-2019.6.16-py37_1 cffi pkgs/main/linux-64::cffi-1.12.3-py37h2e261b9_0 cftime pkgs/main/linux-64::cftime-1.0.3.4-py37hdd07704_1001 chameleon pkgs/main/linux-64::chameleon-3.6-py37_0 chardet pkgs/main/linux-64::chardet-3.0.4-py37_1003 click pkgs/main/linux-64::click-7.0-py37_0 cryptography pkgs/main/linux-64::cryptography-2.3.1-py37hc365091_0 curl pkgs/main/linux-64::curl-7.61.0-h84994c4_0 cycler pkgs/main/linux-64::cycler-0.10.0-py37_0 dbus pkgs/main/linux-64::dbus-1.13.6-h746ee38_0 execnet pkgs/main/noarch::execnet-1.6.1-py_0 expat pkgs/main/linux-64::expat-2.2.6-he6710b0_0 flask pkgs/main/noarch::flask-1.1.1-py_0 flask-httpauth conda-forge/noarch::flask-httpauth-3.3.0-py_0 fontconfig pkgs/main/linux-64::fontconfig-2.13.0-h9420a91_0 freetype pkgs/main/linux-64::freetype-2.9.1-h8a8886c_1 fs conda-forge/linux-64::fs-2.3.0-py37_0 fs.sshfs conda-forge/linux-64::fs.sshfs-0.10.3-py37_0 fs.webdavfs conda-forge/linux-64::fs.webdavfs-0.3.7-py37_0 fs_filepicker conda-forge/linux-64::fs_filepicker-0.3.7-py37_2 furl pkgs/main/linux-64::furl-2.0.0-py37_0 future pkgs/main/linux-64::future-0.17.1-py37_0 geos pkgs/main/linux-64::geos-3.6.2-heeff764_2 glib pkgs/main/linux-64::glib-2.56.2-hd408876_0 gst-plugins-base pkgs/main/linux-64::gst-plugins-base-1.14.0-hbbd80ab_1 gstreamer pkgs/main/linux-64::gstreamer-1.14.0-hb453b48_1 hdf4 pkgs/main/linux-64::hdf4-4.2.13-h3ca952b_2 hdf5 pkgs/main/linux-64::hdf5-1.10.2-hba1933b_1 html5lib pkgs/main/linux-64::html5lib-1.0.1-py37_0 humanfriendly pkgs/main/linux-64::humanfriendly-4.18-py37_0 icu pkgs/main/linux-64::icu-58.2-h9c2bf20_1 idna pkgs/main/linux-64::idna-2.8-py37_0 importlib_metadata pkgs/main/linux-64::importlib_metadata-0.19-py37_0 intel-openmp pkgs/main/linux-64::intel-openmp-2019.4-243 isodate pkgs/main/noarch::isodate-0.6.0-py_1 itsdangerous pkgs/main/linux-64::itsdangerous-1.1.0-py37_0 jinja2 pkgs/main/linux-64::jinja2-2.10.1-py37_0 jpeg pkgs/main/linux-64::jpeg-9b-h024ee3a_2 jplephem conda-forge/noarch::jplephem-2.9-pyh11f86e8_0 kiwisolver pkgs/main/linux-64::kiwisolver-1.1.0-py37he6710b0_0 libcurl pkgs/main/linux-64::libcurl-7.61.0-h1ad7b7a_0 libedit pkgs/main/linux-64::libedit-3.1.20181209-hc058e9b_0 libffi pkgs/main/linux-64::libffi-3.2.1-hd88cf55_4 libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0 libgfortran-ng pkgs/main/linux-64::libgfortran-ng-7.3.0-hdf63c60_0 libnetcdf pkgs/main/linux-64::libnetcdf-4.6.1-h10edf3e_1 libpng pkgs/main/linux-64::libpng-1.6.37-hbc83047_0 libsodium pkgs/main/linux-64::libsodium-1.0.16-h1bed415_0 libssh2 pkgs/main/linux-64::libssh2-1.8.0-h9cfc8f7_4 libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0 libtiff pkgs/main/linux-64::libtiff-4.0.10-h2733197_2 libuuid pkgs/main/linux-64::libuuid-1.0.3-h1bed415_2 libxcb pkgs/main/linux-64::libxcb-1.13-h1bed415_1 libxml2 pkgs/main/linux-64::libxml2-2.9.9-hea5a465_1 libxslt pkgs/main/linux-64::libxslt-1.1.33-h7d1a2b0_0 lxml pkgs/main/linux-64::lxml-4.3.4-py37hefd8a0e_0 markupsafe pkgs/main/linux-64::markupsafe-1.1.1-py37h7b6447c_0 matplotlib pkgs/main/linux-64::matplotlib-3.0.2-py37h5429711_0 mkl pkgs/main/linux-64::mkl-2019.4-243 mkl-service pkgs/main/linux-64::mkl-service-2.0.2-py37h7b6447c_0 mkl_fft pkgs/main/linux-64::mkl_fft-1.0.14-py37ha843d7b_0 mkl_random pkgs/main/linux-64::mkl_random-1.0.2-py37hd81dba3_0 more-itertools pkgs/main/linux-64::more-itertools-7.2.0-py37_0 mss conda-forge/linux-64::mss-1.8.2-py37_1 ncurses pkgs/main/linux-64::ncurses-6.1-he6710b0_1 netcdf4 pkgs/main/linux-64::netcdf4-1.4.2-py37h4b4f87f_0 numpy pkgs/main/linux-64::numpy-1.16.4-py37h7e9f1db_0 numpy-base pkgs/main/linux-64::numpy-base-1.16.4-py37hde5b4d6_0 olefile pkgs/main/linux-64::olefile-0.46-py37_0 openssl pkgs/main/linux-64::openssl-1.0.2s-h7b6447c_0 orderedmultidict pkgs/main/linux-64::orderedmultidict-1.0.1-py37_0 owslib pkgs/main/noarch::owslib-0.18.0-py_0 packaging pkgs/main/linux-64::packaging-19.1-py37_0 paramiko pkgs/main/linux-64::paramiko-2.4.2-py37_0 pcre pkgs/main/linux-64::pcre-8.43-he6710b0_0 pillow pkgs/main/linux-64::pillow-5.4.1-py37h34e0f95_0 pip pkgs/main/linux-64::pip-19.1.1-py37_0 pluggy pkgs/main/noarch::pluggy-0.12.0-py_0 proj4 pkgs/main/linux-64::proj4-5.2.0-he6710b0_1 psutil pkgs/main/linux-64::psutil-5.6.3-py37h7b6447c_0 py pkgs/main/linux-64::py-1.8.0-py37_0 pyasn1 pkgs/main/noarch::pyasn1-0.4.6-py_0 pycparser pkgs/main/linux-64::pycparser-2.19-py37_0 pynacl pkgs/main/linux-64::pynacl-1.3.0-py37h7b6447c_0 pyopenssl pkgs/main/linux-64::pyopenssl-19.0.0-py37_0 pyparsing pkgs/main/noarch::pyparsing-2.4.2-py_0 pyproj pkgs/main/linux-64::pyproj-1.9.6-py37h14380d9_0 pyqt pkgs/main/linux-64::pyqt-5.9.2-py37h05f1152_2 pyshp pkgs/main/noarch::pyshp-2.1.0-py_0 pysocks pkgs/main/linux-64::pysocks-1.7.0-py37_0 pytest pkgs/main/linux-64::pytest-5.0.1-py37_0 pytest-arraydiff pkgs/main/linux-64::pytest-arraydiff-0.3-py37h39e3cac_0 pytest-astropy pkgs/main/linux-64::pytest-astropy-0.5.0-py37_0 pytest-doctestplus pkgs/main/linux-64::pytest-doctestplus-0.3.0-py37_0 pytest-openfiles pkgs/main/linux-64::pytest-openfiles-0.3.2-py37_0 pytest-remotedata pkgs/main/linux-64::pytest-remotedata-0.3.2-py37_0 python pkgs/main/linux-64::python-3.7.0-h6e4f718_3 python-dateutil pkgs/main/linux-64::python-dateutil-2.8.0-py37_0 pytz pkgs/main/noarch::pytz-2019.2-py_0 qt pkgs/main/linux-64::qt-5.9.6-h8703b6f_2 readline pkgs/main/linux-64::readline-7.0-h7b6447c_5 requests pkgs/main/linux-64::requests-2.22.0-py37_0 scipy pkgs/main/linux-64::scipy-1.3.0-py37h7c811a0_0 setuptools pkgs/main/linux-64::setuptools-41.0.1-py37_0 sgp4 conda-forge/noarch::sgp4-1.4-pyh24bf2e0_3 sip pkgs/main/linux-64::sip-4.19.8-py37hf484d3e_0 six pkgs/main/linux-64::six-1.12.0-py37_0 skyfield conda-forge/noarch::skyfield-1.11-py_0 soupsieve pkgs/main/linux-64::soupsieve-1.9.2-py37_0 sqlite pkgs/main/linux-64::sqlite-3.29.0-h7b6447c_0 tk pkgs/main/linux-64::tk-8.6.8-hbc83047_0 tornado pkgs/main/linux-64::tornado-6.0.3-py37h7b6447c_0 unicodecsv pkgs/main/linux-64::unicodecsv-0.14.1-py37_0 urllib3 pkgs/main/linux-64::urllib3-1.24.2-py37_0 wcwidth pkgs/main/linux-64::wcwidth-0.1.7-py37_0 webdavclient2 conda-forge/noarch::webdavclient2-0.1.1-py_0 webencodings pkgs/main/linux-64::webencodings-0.5.1-py37_1 werkzeug pkgs/main/noarch::werkzeug-0.15.4-py_0 wheel pkgs/main/linux-64::wheel-0.33.4-py37_0 xz pkgs/main/linux-64::xz-5.2.4-h14c3975_4 zipp pkgs/main/noarch::zipp-0.5.2-py_0 zlib pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3 zstd pkgs/main/linux-64::zstd-1.3.7-h0b5b093_0 -
- changed status to on hold
we fixed/solved this on the feedstock by patching and wait for the solution of anaconda/conda
-
reporter
How did you fix this?
-
I applied the patch we had before the build system used environments too.
This patch is in the linked feedstock dir https://github.com/conda-forge/mss-feedstock/blob/master/recipe/In the past we needed three patches, now it's reduced to one.
-
The starting of the problems of PROJ_LIB was that a project tight to strong to an old version. I don’t want to do the same.
What do you think about when we make it configurable? for the gui we could add it to the default settings and for the server to that aquivalent too. Then a user can overwrite it and we may get rid of all other related issues.
-
reporter
Thanks, the link clarifies the solution.
Due to the number of client installations compared to servers, I worry more for the server, especially as I assume that most users use the link for starting, as it is much more convinient than the terminal due to the environment (i.e. mss is not per se in the path).
This is complicated, let’s discuss this offline and note the resolution here.
-
reporter
Just to note, with your patch for mss works both with py36 and py37. py36 is for some reason the “automatic” outcome, but as it still works there, this shouldn’t be an issue for now.
- Log in to comment
