Commits
Author  Commit  Message  Labels  Comments  Approvals  Date 


Use Python Universal Read to correctly parse tables generated with biom convert b




FIX: fixed error is readme, and a few typos




FIX: removed global matplotlib import from simulated_data




DOC: formatted as rst




FIX: by default logtransform fraction when computing basis correlations.




ENH: regular a pseudocount normalization option added to basis_correlations.




STY: iteration averaging moved from SurveyMatrix to basis_correlation (Main function).
makes for easier progrmatic calling of SparCC using numpy arrays as input.




Starting 'fastSparCC' branch




ENH: added heatmap_clust for plotting clustered heatmaps




BUG: bad import removed from dist_mat




DOC: fixed typos in readme




ENH: switch to clr if sparcc results in cor>1.
BUG: averaging of iteration is on cor matrix and variance, rather than covariance matrix.




FIX: print output file name in sample_dist




delete cov_mat_spark.out




Init commint of SparCC.
Currently based on the MatrixDictionary class.


