Commits

Author Commit Message Labels Comments Date
erik...@gmail.com
Use Python Universal Read to correctly parse tables generated with biom convert -b
yonatanf
FIX: fixed error is readme, and a few typos
yonatanf
FIX: removed global matplotlib import from simulated_data
yonatanf
DOC: formatted as rst
yonatanf
FIX: by default log-transform fraction when computing basis correlations.
yonatanf
ENH: regular a pseudo-count normalization option added to basis_correlations.
yonatanf
STY: iteration averaging moved from SurveyMatrix to basis_correlation (Main function).
yonatanf
ENH: added heatmap_clust for plotting clustered heatmaps
yonatanf
BUG: bad import removed from dist_mat
yonatanf
DOC: fixed typos in readme
yonatanf
ENH: switch to clr if sparcc results in |cor|>1.
yonatanf
FIX: print output file name in sample_dist
yonatanf
delete cov_mat_spark.out
yonatanf
Init commint of SparCC. Currently based on the MatrixDictionary class.