Thanks for putting this together - looks great. Out of curiosity, do you have any out-of-the-box scripts for converting the correlation matrices into Edge and Node tables that could be loaded into cytoscape? I'm thinking of the graphs shown in the figures in the Sparcc Plos compbio 2012 paper (doi:10.1371/journal.pcbi.1002687 ).
I'm sure that pulling these out is trivial, but if something exists I'd rather ask and not reinvent the wheel. Thanks in advance,