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kastman kastman
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yonatanf yonatanf
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Use Python Universal Read to correctly parse tables generated with biom convert -b

Author
  1. Erik Kastman
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Description

The table files that I generated from a .biom file downloaded from MG-Rast had line endings of "\r" instead of "\r\n", so initial table parsing failed. Using the file.open's Universal mode fixed this read issue.

See also: http://stackoverflow.com/a/5174274/218118

Don't know if it helps, but might as well pass it back. Thanks,

Erik Kastman

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