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  3. ROSE

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Issues (1–25 of 70)

Title T P Status Votes Assignee Created Updated Actions
#34: IndexError: list index out of range
bug major resolved
young_computation
#70: KeyError: 'mm9'
bug major new
#63: How to make "refseq.ucsc" of the other species
task minor new
#69: sh: R: command not found
enhancement major resolved
#51: ROSE_bamToGFF issue
bug major new
#68: error
bug major new
#67: startDict[gene]['sense'] = refseqTable[refseqDict[gene][0]][3]
task major new
#66: Trace Back Index error with gene_mapper.py and Warning message
bug major new 1
#65: Index out of Range closestGene = allEnhancerGenes[distList.index(min(distList))] Traceback (most recent call last):ROSE_geneMapper.py
bug major new 1
#64: no plot_points.png output
bug major new
#52: ERROR: OPERATION TIME OUT. MAPPING OUTPUT NOT DETECTED
bug critical new 1
#26: Unexpected running result using ROSE
bug major new 1
#59: ROSE_bamToGFF.py : UnboundLocalError: local variable 'newGFF' referenced before assignment
bug major open
#62: Error in mapping
task major new
#61: Mapping Issue
bug major new
#60: ROSE running on python 2.7
enhancement major new
#58: TAB and space issue and deprecated functions.
bug major new
#57: SyntaxError and program is taking too long time to map
bug major new
#43: 0 superenhancers identified
bug major new 1
#56: Error in running example code and own samples as well
bug major new
#55: how duplicates are handled?
task minor new
#54: ERROR: FOR GFFS, ALL REGIONS MUST HAVE A UNIQUE IDENTIFIER IN COLUMN 2
bug major new
#53: How to add name of the top most ranked gene on the SE plot
task critical new
#42: Where to find newer versions of gff file of constituent enhancer
enhancement major resolved
#38: Will this program work using samtools 2.×× ,R 3.××，python3？
bug major resolved
young_computation
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