ROSE_geneMapper.py
Issue #28
new
I run the follwoing ROSE command:
python ROSE_geneMapper.py -g hg19 -i mapEnhancerH3K27acChIP/DMSO/DMSO_H3K27acChIP_replicated_peaks_SuperEnhancers.table.txt -o mapEnhancerH3K27acChIP/DMSO/SE_to_Genes_100kb
Got the following error:
MAKING TSS COLLECTION Traceback (most recent call last): File "ROSE_geneMapper.py", line 322, in <module> main() File "ROSE_geneMapper.py", line 299, in main enhancerToGeneTable,geneToEnhancerTable = mapEnhancerToGene(annotFile,enhancerFile,transcribedFile,True,window,noFormatTable) File "ROSE_geneMapper.py", line 171, in mapEnhancerToGene superDict[refID].append(int(line[-1])) ValueError: invalid literal for int() with base 10: '188268.2756'
Could you please help troubleshoot?
Thanks Sam
Comments (0)
