running rose with hg38

[Sana B Badri]

Hi ROSE Team,

I successfully ran ROSE with example dataset but recently I tried running ROSE with hg38 and it fails.

I downloaded the refseq annotation file from ucsc table browser (See attached) and put it in the annotation folder and I get the following error:

Traceback (most recent call last): File "ROSE_main.py", line 496, in <module> main() File "ROSE_main.py", line 344, in main annotFile = genomeDict[upper(genome)] KeyError: 'HG38'

please help.

[Sana B Badri]

Never mind just had to edit the ROSE_main.py code.