Example Error
Dear ROSE developer,
I got an issue when running ROSE example data:
module load python/2.7.3 module load r/3.4.1 module load samtools/1.4
python ROSE_main.py -g HG18 -i ~/enhancer/chipseq/rose/ROSE_DATA/data/HG18_MM1S_MED1.gff -r ~/enhancer/chipseq/rose/ROSE_DATA/data/MM1S_MED1.hg18.bwt.sorted.bam -c ~/enhancer/chipseq/rose/ROSE_DATA/data/MM1S_WCE.hg18.bwt.sorted.bam -o example2 -s 12500 -t 2500
19200 19300 19400 ARGUMENT 'example2/' ignored
ARGUMENT 'example2/HG18_MM1S_MED1_12KB_STITCHED_TSS_DISTAL_ENHANCER_REGION_MAP.txt' ignored
ARGUMENT 'HG18_MM1S_MED1' ignored
ARGUMENT 'MM1S_WCE.hg18.bwt.sorted.bam' ignored
R version 3.4.1 (2017-06-30) -- "Single Candle" Copyright (C) 2017 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit)
#MAKING HOCKEY STICK PLOT plotFileName = paste(outFolder,enhancerName,'_Plot_points.png',sep='') png(filename=plotFileName,height=600,width=600) Error in .External2(C_X11, paste0("png::", filename), g$width, g$height, : unable to start device PNG Calls: png In addition: Warning message: In png(filename = plotFileName, height = 600, width = 600) : unable to open connection to X11 display '' Execution halted folder example2/ does not exist folder example2/gff/ does not exist folder example2/mappedGFF/ does not exist USING /srv/gsfs0/projects/cleary/fpan/enhancer/chipseq/rose/ROSE_DATA/data/HG18_MM1S_MED1.gff AS THE INPUT GFF USING HG18 AS THE GENOME MAKING START DICT
Would you please help to take a look at this issue. Thanks.
Feng
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