Error in mapping

Issue #62 new
Former user created an issue

Hi, I am getting following error while running -

PAUSING TO MAP {'matrix': '1', 'extension': '200', 'floor': '1', 'sense': 'both', 'output': './H3K4me3/2i/mappedGFF/Merged_H3K4me3_2i-CDM_ChIP-peaks_30M.merged.H3K3me3.WT.2i.sort.bam_MAPPED.gff', 'bam': './H3K4me3/30M.merged.H3K3me3.WT.2i.sort.bam', 'rpm': True, 'input': './H3K4me3/Merged_H3K4me3_2i-CDM_ChIP-peaks.gff'} [] {'matrix': '1', 'extension': '200', 'floor': '1', 'sense': 'both', 'output': './H3K4me3/2i/mappedGFF/Merged_H3K4me3_2i-CDM_ChIP-peaks_30M.input.WT.2i.sorted.bam_MAPPED.gff', 'bam': './H3K4me3/30M.input.WT.2i.sorted.bam', 'rpm': True, 'input': './H3K4me3/Merged_H3K4me3_2i-CDM_ChIP-peaks.gff'} [] mapping to GFF and making a matrix with fixed bin number {'matrix': '1', 'extension': '200', 'floor': '1', 'sense': 'both', 'output': './H3K4me3/2i/mappedGFF/Merged_H3K4me3_2i-CDM_ChIP-peaks_12KB_STITCHED_TSS_DISTAL_30M.merged.H3K3me3.WT.2i.sort.bam_MAPPED.gff', 'bam': './H3K4me3/30M.merged.H3K3me3.WT.2i.sort.bam', 'rpm': True, 'input': './H3K4me3/2i/gff/Merged_H3K4me3_2i-CDM_ChIP-peaks_12KB_STITCHED_TSS_DISTAL.gff'} [] {'matrix': '1', 'extension': '200', 'floor': '1', 'sense': 'both', 'output': './H3K4me3/2i/mappedGFF/Merged_H3K4me3_2i-CDM_ChIP-peaks_12KB_STITCHED_TSS_DISTAL_30M.input.WT.2i.sorted.bam_MAPPED.gff', 'bam': './H3K4me3/30M.input.WT.2i.sorted.bam', 'rpm': True, 'input': './H3K4me3/2i/gff/Merged_H3K4me3_2i-CDM_ChIP-peaks_12KB_STITCHED_TSS_DISTAL.gff'} [] Kindly suggest me!

Thanks in advance!

Best -Dhurjhoti

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