KeyError: 'mm9'

Issue #70 new
Former user created an issue

$ python ./ROSE_main.py -g MM9 -i 20230218_Heart.bed -r CT-Flag.sorted.bam -c IgG.sorted.bam -o roseresult -t 2500 -s 12500 USING roseresult/gff/20230218_Heart.gff AS THE INPUT GFF USING MM9 AS THE GENOME MAKING START DICT LOADING IN GFF REGIONS Traceback (most recent call last): File "./ROSE_main.py", line 497, in <module> main() File "./ROSE_main.py", line 354, in main referenceCollection = ROSE_utils.gffToLocusCollection(inputGFFFile) File "/home/shpc_101125/biosoft/ROSE/ROSE_utils.py", line 528, in gffToLocusCollection lociList.append(Locus(line[0],line[3],line[4],line[6],name)) File "/home/shpc_101125/biosoft/ROSE/ROSE_utils.py", line 271, in init self._sense = self.__senseDict[sense] KeyError: 'mm9'

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