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  3. ROSE

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Issues (26–50 of 50)

Title T P Status Votes Assignee Created Updated Actions
#48: Qi: What is the difference between "_Gateway_SuperEnhancers" and "SuperEnhancers" files? Thank you so much!
task major resolved 1
#50: chrUn_gl000220
task major new
#47: TypeError: float() argument must be a string or a number while running ROSE_main.py
bug major new
#19: output changed and how to filter the super-enhancer list?
bug major new
#40: how to find out constituent enhancers within super enhancers?
bug major new
#39: What does 'CONSTITUENT_SIZE' mean ?
bug major new
#37: Example Error
bug major new
young_computation
#30: How super enhacer regions are detected
task major resolved
#23: BAMtoGFF issue..again
bug major closed
#29: Difficulty reading BAMs from PIPE after qsub
bug major new
#28: ROSE_geneMapper.py
bug major new
#27: ROSE_bamToGFF error unkown
bug major resolved
young_computation
#12: Difficulty formatting GFF input
bug major new
#25: How to make our own annotation file
enhancement major new
#24: job takes too long to finish
bug major resolved
#15: Error with sample dataset (cannot find .bai)
bug major resolved
young_computation
#10: RUN-ERROR
bug major resolved
young_computation
#8: Question
task major resolved
#6: ROSE_geneMapper.py
bug major resolved
#5: where are the data and example
bug major resolved
#4: A problem with ROSE execution (using the example data set provided with ROSE)
bug major resolved 1
#2: Error: list index out of range
bug major resolved
young_computation
#17: dose it work with chicken genome
bug major new
#16: How to deal with replicates
task major new 1
#14: No release tags
bug major new
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