Better error reporting when user puts scripts in the wrong place

When a user puts setup.sh, run.sh, and collect.sh in the wrong place, datamill doesn't report anything strange, we should probably be a little noisier about this with some warnings.

An example:

~ $ tar tf package.tar.gz
  package/
  package/run.sh
  package/setup.sh
  package/code.tar.gz
  package/collect.sh

vs

~ $ tar tf package_1.tar.gz
  ./
  ./code.tar.gz
  ./run.sh
  ./collect.sh
  ./setup.sh

It seems to be a common mistake, and it's hard for users to figure out that it's happening.

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