Pushed to
zunzuncode/pygtkfit

9f199c0
Updated link for Common Problems

Atlassian Sourcetree is a free Git and Mercurial client for Windows.

Atlassian Sourcetree is a free Git and Mercurial client for Mac.

Welcome to pyGtkFit, an example of creating a cross-platform curve and surface fitting application using pyGtk and the pyeq3 fitting library. see http://zunzun/com/CommonProblems/ If you prefer wxPython, the wxPython version of this code is at: https://bitbucket.org/zunzuncode/wxPythonFit Step 1: Install Python 3, gi, scipy and matplotlib On Debian or Ubuntu Linux, you can use this command: sudo apt-get install python3-gi python3-scipy python3-matplotlib On other operating systems, try the Canopy Express Free version: https://store.enthought.com/ NOTE: if you would like to create PDF files of the fitting results, please also install reportlab using pip: pip3 install reportlab Step 2: Install the pyeq3 fitting library with pip From a command prompt, run the command pip3 install pyeq3 Step 3: Run the pyGtk example From a command prompt run this command: python3 pyGtk.py Step 4: Celebrate You are now curve and surface fitting data using pyGtk! You may also be interested in the django version, which includes PDF files, surface rotations and "function finding". It is available at https://bitbucket.org/zunzuncode/zunzunsite3 Prior to the invention of electronic calculation, only manual methods were available, of course - meaning that creating mathematical models from experimental data was done by hand. Even Napier's invention of logarithms did not help much in reducing the tediousness of this task. Linear regression techniques worked, but how to then compare models? And so the F-statistic was created for the purpose of model selection, since graphing models and their confidence intervals was practically out of the question. Forward and backward regression techniques used linear methods, requiring less calculation than nonlinear methods, but limited the possible mathematical models to linear combinations of functions. With the advent of computerized calculations, nonlinear methods which were impractical in the past could be automated and made practical. However, the nonlinear fitting methods all required starting points for their solvers - meaning in practice you had to have a good idea of the final equation parameters to begin with! If however a genetic or monte carlo algorithm searched error space for initial parameters prior to running the nonlinear solvers, this problem could be strongly mitigated. This meant that instead of hit-or-miss forward and backward regression, large numbers of known linear *and* nonlinear equations could be fitted to an experimental data set, and then ranked by a fit statistic such as AIC or SSQ errors. Note that for an initial guesstimate of parameter values, not all data need be used. A reduced size data set with min, max, and (hopefully) evenly spaced additional data points in between are used. The total number of data points required is the number of equation parameters plus a few extra points. Reducing the data set size used by the code's genetic algorithm greatly reduces total processing time. I tested many different methods before choosing the one in the code, a genetic algorithm named "Differential Evolution". I hope you find this code useful, and to that end I have sprinkled explanatory comments throughout the code. If you have any questions or comments, please e-mail me directly at zunzun@zunzun.com or by posting to the user group at the URL https://groups.google.com/forum/#!forum/zunzun_dot_com James R. Phillips 2548 Vera Cruz Drive Birmingham, AL 35235 USA email: zunzun@zunzun.com