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Issues (1–25 of 197)

Title T P Status Votes Assignee Milestone Created Updated Actions
#194: Rhesus macaque
bug blocker new
#173: Function plotNovel() found nv NA/NaN in Introductory Webinar and Jupyter Notebook
bug critical resolved
#133: MakeDb igblast partial alignments filter not working correctly
bug critical resolved
#132: Legitimate insertions are removed when parsing IgBLAST results
bug critical resolved
#117: Verify indexing for functions
task critical resolved
#1: MakeDb fails to run with --log option
bug critical resolved
#12: MakeDb fails to execute with --outname argument
bug critical resolved
#197: Update IgBLAST example to include c_call
task major new
#188: C region in the igblast output breaks MakeDb.py
bug major resolved
#191: # Failure download reference databases and setup IGDATA directory
bug major closed
#185: MakeDb all TRA goes to fail file
bug major resolved
#193: CreateGermlines.py fails with error 'Germline sequence differs in length from input sequence by X characters.'
bug major resolved
#195: ValueError: Missing one or more columns in heavy chain file: clone_id
bug major resolved
#190: CreateGermlines.py does not generate full germline upon -g full option
bug major new
#189: Error in conda version of changeo
bug major resolved
#187: CreateGermlines.py fails
bug major resolved
#179: Assign Genes skips several rows of sequences
bug major resolved
#178: When no junction found, MakeDb imgt doesn't report j_germ_start correctly
bug major new
#176: Consider adding .py to usage in command line documentation
proposal major resolved
#177: fetch_imgtdb.sh empty V files
bug major closed
#174: MakeDb.py igblast arguments --regions and --scores produces errors
bug major resolved
#147: Change-O modifications to support 10X data
enhancement major resolved
#172: fetch_igblastdb.sh seems to be broken
bug major closed
#171: KeyError: 'V Frame shift'
bug major resolved
#169: Error in MakeDb.py
bug major resolved
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