1. kleinstein-lab Avatar kleinstein-lab
  2. B Cell Repertoires
  3. changeo

Issues

Filter by:

Advanced search

Issues (1–25 of 197)

Title T P Status Votes Assignee Milestone Created Updated Actions
#197: Update IgBLAST example to include c_call
task major new
#188: C region in the igblast output breaks MakeDb.py
bug major resolved
#196: Can my IGH seq data be analyzed by this pipeline?
proposal minor closed
#191: # Failure download reference databases and setup IGDATA directory
bug major closed
#185: MakeDb all TRA goes to fail file
bug major resolved
#193: CreateGermlines.py fails with error 'Germline sequence differs in length from input sequence by X characters.'
bug major resolved
#195: ValueError: Missing one or more columns in heavy chain file: clone_id
bug major resolved
#194: Rhesus macaque
bug blocker new
#186: MakeDb.py igblast fails with KeyError: '# Query:'
bug minor resolved
#192: createGermlines.py error
bug minor resolved
#190: CreateGermlines.py does not generate full germline upon -g full option
bug major new
#189: Error in conda version of changeo
bug major resolved
#187: CreateGermlines.py fails
bug major resolved
#181: Update CreateGermlines to be consistent with clean_imgtdb.py and use the first allele
bug minor resolved
#184: Add merge command to IMGT parsings docs
enhancement minor resolved
#179: Assign Genes skips several rows of sequences
bug major resolved
#183: DefineClones.py generates non determistic clone_id with nproc > 1
enhancement minor wontfix
#182: Error with MakeDb.py imgt
task minor resolved
#178: When no junction found, MakeDb imgt doesn't report j_germ_start correctly
bug major new
#176: Consider adding .py to usage in command line documentation
proposal major resolved
#180: Have AssignGenes pass igblast warnings to the user somehow
enhancement minor new
#177: fetch_imgtdb.sh empty V files
bug major closed
#174: MakeDb.py igblast arguments --regions and --scores produces errors
bug major resolved
#175: MakeDb.py igblast --format description needs adjusting
bug trivial resolved
#131: IMGT seqence/germline build in ConvertDb doesn't seem right
bug minor new 1
  2. 1
  3. 2
  4. 3
  5. 4
  6. 5
  7. 6
  8. 7
  9. 8