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Issues (51–75 of 197)

Title T P Status Votes Assignee Milestone Created Updated Actions
#87: MakeDb does not support multiple D segment junctions
enhancement major new
#137: tbl2asn wrapper fails in some environments
bug minor closed
#36: Extension of distance matrix doesn't properly account for ambiguous characters
enhancement minor resolved
#154: --md option for BuildTrees.py cannot accept more than one field
bug major resolved
#153: BuildTrees error handling if SEQUENCE_ID contains commas or parentheses
bug major resolved
#149: All `GERMLINE_IMGT` appear to be `NA` from `MakeDb.py imgt` v0.4.5
bug major resolved
#148: Maybe merge extended field arguments in MakeDb
enhancement minor resolved
#145: Support for 10X VDJ
enhancement major resolved
#146: CreateGermlines --cloned: select one D using majority rule
proposal major new
#144: pRESTO style annotations and IgBlast AIRR output
proposal major new
#143: DefineClones doesn't work when db was created with MakeDb igblast --asis-calls
proposal major new
#139: DefineClones will group all sequences together if the junction column is missing
bug major resolved
#140: MakeDb assigning failed germlines to None
bug minor resolved
#142: BuildTrees.py - output not usable by IgPhyML when --outname begins with a number
bug major resolved
#138: CreateGermlines gives warning about IMGT-numbering spacers
bug major resolved
#136: DefineClones fails with "error in sibling process"
bug major resolved
#135: Use yaml via -y to support additional Biosample attributes
enhancement minor resolved
#134: Improve error reporting
enhancement major resolved
#133: MakeDb igblast partial alignments filter not working correctly
bug critical resolved
#63: Simple IgBLAST wrapper
enhancement major resolved
#132: Legitimate insertions are removed when parsing IgBLAST results
bug critical resolved
#117: Verify indexing for functions
task critical resolved
#129: bug in the example of: "Determining a clustering threshold"
bug major resolved
#127: Add IMGT-gapping to AIRR conversion
enhancement minor resolved
#128: Add germline construction to MakeDb
enhancement minor resolved
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