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Issues (1–25 of 40)

Title T P Status Votes Assignee Created Updated Actions
#81: Jiang 2013 example script incompatible with Mac OS
proposal minor new
#15: error during AlignSets
bug minor resolved
#87: Add unique identify to start of read names for downstream analysis
enhancement minor resolved
#86: AssemblePairs.py sequential fails when input file lists are added under the '-1' and '-2' arguments.
bug minor resolved
#16: Reduce multiprocessing overhead
enhancement minor new
#71: AssemblePairs get stuck
task minor duplicate
#73: Read configuration discovery and debug example docs
enhancement minor new 1
#69: Add example workflow for UMI following primer
enhancement minor new
#66: Add simple preprocessing workflow
enhancement minor new
#67: Should --scanrev be default for AssemblePairs?
enhancement minor new
#62: Tools should not write empty fail files
enhancement minor resolved
#64: Removing pandas from countMismatches in EstimateError.py
enhancement minor resolved
#61: Update example workflows for presto v0.5.7
enhancement minor resolved
#44: Add ParseHeaders mode to copy multiple annotations into one
enhancement minor resolved
#32: Add collapse action flag to PairSeq
enhancement minor resolved
#33: Add option to rename MaskPrimers output fields
enhancement minor resolved
#55: Add subcommands to MaskPrimers to deal with data for which primers are unavailable
enhancement minor resolved
#36: Check if we can use the sequence description for the id
enhancement minor resolved
#34: Add ENA header support
enhancement minor resolved
#26: Added error and median quality filters
enhancement minor wontfix
#25: Add support for input of gzip files and/or stdin
enhancement minor wontfix
#12: minlen capability with MaskPrimers
enhancement minor resolved
#59: UnifyHeaders consensus Log
proposal minor invalid
#58: Add more details to UnifyHeaders log
enhancement minor resolved
#31: Add sniff mode to ConvertHeaders
enhancement minor wontfix
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