RNA pdbaln

[Former user]

Hi,

more of a question than an issue, but i am trying to push some RNA structure through a PCA pipeline and it fails a few ways.

the simplest failure is when i read in a few RNA pdbs and pdbaln fails with

Could not align PDBs due to missing amino acid sequence in files: 2E5L.A.pdb, 2F4V.A.pdb, 2HHH.A.pdb, 2UU9.A.pdb, 2UUA.A.pdb...

[Xinqiu Yao]

Hi,

The pdbaln() function does not support RNA/DNA sequences yet. We may include this feature in a future release of bio3d. Thanks for reporting.

[Xinqiu Yao]

Hi,

more of a question than an issue, but i am trying to push some RNA structure through a PCA pipeline and it fails a few ways.

the simplest failure is when i read in a few RNA pdbs and pdbaln fails with

Could not align PDBs due to missing amino acid sequence in files: 2E5L.A.pdb, 2F4V.A.pdb, 2HHH.A.pdb, 2UU9.A.pdb, 2UUA.A.pdb...