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Issues (1–25 of 73)

Title T P Status Votes Assignee Version Created Updated Actions
#448: Very slow cna(cij) calculation
ToDo
enhancement major new 1
#950: Lineal mutual information for ensemble NMA
Q&A
enhancement minor new
#920: How to implement elbow method for clustering to find the optimal K and how to generate a sorted table of eigenvalues with eigenvectors?
Q&A
task major new
#921: blast.pdb does not return the PDBids of PDBs with identical sequences (so called "identical proteins" by NCBI) present in the PDB database.
Q&A
bug major new
#917: I convert my pdb to charmm and get hydrogens removed
bug major new
#876: Is it possible to calculate RoG from a MD trajectory file?
Q&A
task major resolved
#912: Functions to easily extract various info from aa.index
enhancement major new
#910: Find PFAM annotations of PDB entries error
ToDo
bug major new
#903: Plotting PCA in 3d
Q&A
task minor new
#901: pdb2sse secondary structure is quite different to the DSSP4 result
bug minor new
#883: help with using distance matrix calculation.
Q&A
task critical new
#718: vmd.cna error
ToDo
task major new
#898: Not possible to read.pdb('1ao7.pdb2", multi = TRUE)
ToDo
bug major new
#893: communities not colored on the struct and struct is not tube, VMD
bug major new
#886: Importing DCCM and plotting
Q&A
task major new
#881: pdbaln() error: read.fasta.pdb(s, prefix = "", pdbext = "", pdblist = files, : No corresponding PDB files found
bug minor new
#877: Not issue, but rather a request for information
Q&A
task minor new
#872: Torsion angle calculations for multi-model PDB file
Q&A
task minor new
#755: Convert.pdb incorrectly assesses chain when converting helix/sheet
bug major resolved
#720: hmmscan error
bug minor resolved
#830: Failure to retrieve annotations for some PDBs using pdb.annotate
bug minor resolved
#856: Analyzing Cellulose strictures using Bio3d
Q&A
task minor new
#849: pdb.annotate error
bug major resolved
#846: pca clustering
Q&A
task trivial resolved
#866: ClusPro output pdb file gives read.pdb error
Q&A
bug major resolved
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