pdbaln() error: read.fasta.pdb(s, prefix = "", pdbext = "", pdblist = files, : No corresponding PDB files found

[Former user]

Hello, I'm following the following tutorial: http://thegrantlab.org/bio3d_v2/tutorials/principal-component-analysis

Under "Working with multiple PDB structures", I'm able to perform the following:

ids <- c("1TND_B","1AGR_A","1FQJ_A","1TAG_A","1GG2_A","1KJY_A")
raw.files <- get.pdb(ids)
files <- pdbsplit(raw.files, ids)

However, when I do

pdbs <- pdbaln(files)

I get the following error:

Error in read.fasta.pdb(s, prefix = "", pdbext = "", pdblist = files, : No corresponding PDB files found

If anyone has any solutions to this that would be greatly appreciated!

[Xinqiu Yao]

Hi,

‌

I can’t reproduce the error. Can you update your bio3d to the latest version and try again?

‌

FYI, the bio3d website has been updated. Please use the new version for any documentation: http://thegrantlab.org/bio3d/articles/online/pca_vignette/Bio3D_pca.html