read.cif doesn't work for some PDBs

[Tomasz Smolarczyk]

read.cif doesn’t work for some PDBs.

Examples:

‌

read.cif("1GGR")
read.cif("3WEX")

For those two examples I get an error:

‌

Error in .read_cif(file, maxlines = maxlines, multi = multi) : 
  Could not convert string to int (

bio3d version: 2.3.4.

read.pdb works fine for those two examples.

‌

For most of the PDB it works fine, but there are couple of them that cause trouble.

[Xinqiu Yao]

Hi Tomasz,

‌

Thanks for the catch. We will take a look.

‌

Btw, both pdb IDs work with read.pdb() that you can use if there is no particular requirement of the mmCIF format data.

[Lars Skjærven]

see https://bitbucket.org/Grantlab/bio3d/pull-requests/15/bugfix-for-readcif/diff

[Xinqiu Yao]

The problem is solved with recent commits.