geostas stalls at core.find

[Mehmet Sen]

Hi,

Somehow, geostas stalls right after the core.find section when doing tutorials.

Here is the simple progress

library(bio3d)

pdb <- read.pdb("1d1d", multi=TRUE)

Note: Accessing on-line PDB file

ca.inds <- atom.select(pdb, "calpha")

gs  <- geostas(pdb)

.. 220 'calpha' atoms selected

.. 'xyz' coordinate data with 20 frames 

.. 'fit=TRUE': running function 'core.find'

After this, it just stalls.

I would appreciate any suggestion.

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[Xinqiu Yao]

Hi,

‌

I just tested and it run well. Make sure you have updated to the latest version of bio3d. Also, what OS are you using? Can you try turning off multicores using geostas(pdb, ncore=1)?

[Mehmet Sen]

Thanks this solved the problem.