wrong warning in gap.inspect
Issue #86
resolved
> gaps <- gap.inspect(aln)
Warning message:
In gap.inspect(aln) : Taking $xyz component (NOT $ali)
> aln$xyz
NULL
Comments (3)
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BUGFIX: gap.inspect() take $xyz component of '3dalign' objects by default
Also changed warning() message. See Issue
#86→ <<cset 42538b24c485>>
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reporter - changed status to resolved
jolly good
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I have committed a change where we now will take the $xyz component if a 3dalign object is the input (as stated in the warning message) and the $ali component if a non '3dalign' class list object is provided (as in the example above).
I think this is sensible but I see that it could be confusing. I will leave this issue open until others chime in.