calling and location of dssp

[Derek Bratcher]

I installed DSSP but it the installation is called mkhssp instead. When I try to run DSSP in bio3d it throws the error:

‌

input: dssp.pdb(pdb, exefile = '/usr/local/bin/mkhssp')

/usr/local/bin/mkhssp
Error in paste(exefile, ver) : object 'ver' not found

input: dssp(pdb)
/usr/local/bin/dssp
Warning in dssp.pdb(pdb) :
  Non-protein residues detected in input PDB: MG, ACT, ADP, HOH
Error in 1:which(type == "  #") : argument of length 0

R version 4.1.2 (2021-11-01) -- "Bird Hippie" Platform: Linux x86_64 Running under: ubuntu 21.10

I installed from https://github.com/cmbi/hssp/releases (directed here by https://swift.cmbi.umcn.nl/gv/dssp/)

followed the instructions via readme https://github.com/cmbi/hssp

[Xinqiu Yao]

Hi,

‌

As I remember, hssp and dssp are different programs. Make sure you are calling the correct one: https://github.com/cmbi/dssp

[Derek Bratcher]

Thank you so much.