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Issues (126–150 of 384)

Title T P Status Votes Assignee Version Created Updated Actions
#603: Is it possible to save ".dat" before plotting?
Q&A
enhancement minor resolved
#604: atom_selection with segid?
Q&A
proposal minor resolved
#610: How to store only first mode result in aanma.pdbs()/nma.pdbs()?
Q&A
task minor resolved
#599: Is the 1st plot in plot(pc$U) the same as plot(pc$au[,1])?
task minor resolved
#581: Typo in the tutorial webpage
ToDo
task minor new
#592: Deformation Energies from MD Trajectories
ToDo
proposal minor new
#591: increase number of chainIDs beyond Z for vmd.cna pdb output
enhancement minor new
#587: Generating protein motion movie from aanma or nma?
Q&A
task minor new
#358: How to get per residue rmsf for each frame in the trajectory?
Q&A
task minor resolved
#588: Using core.find on a specific set of residues or domain
task minor new
#580: How to print mean position (x,y,z) of each atom
Q&A
task minor new
#496: Same sequence PDBs with slightly altered structures give very different networks
task minor resolved
#499: Reading large ensembles
enhancement minor resolved
#505: Radial Distribution Functions (water analysis) and XTC files
enhancement minor resolved
#501: Increasing contact map filter size doesn't reduce community size
task minor resolved
#517: Regarding RMSD/RMSF Plots and DCCM analysis
Q&A
task minor new
#500: how to plot the contribution of each residue in PCA histogram.
task minor resolved
#542: Problem reading multiframe PDB with read.pdb()
ToDo
task minor open
#569: Which ForceField parameters?
task minor resolved
#504: Non-linear torsional pair correlation
enhancement minor resolved
#576: Question: Torsion PCA
Q&A
task minor resolved
#513: dcd file loading error
Q&A
task minor resolved
#506: Error in flucts[i, ] <- all.modes[[i]]$fluctuations :
ToDo
bug minor resolved
#577: get.blast()
proposal minor resolved
#571: Fluctuations plot
Q&A
task minor new
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