Updated by Yoochan Myung 2021-01-30

File mmcsm_na_single_prediction_get Added

+import argparse

+import requests

+import sys

+URL = "http://biosig.unimelb.edu.au/mmcsm_na/api/prediction_single"

+def main(args):

+    job_id = args.job_id

+    params = {

+        "job_id": job_id,

+    }

+    req = requests.get(URL, data=params)

+    print(req.json())

+    return True

+if __name__ == "__main__":

+    parser = argparse.ArgumentParser(description='Retrieve job results for single prediction - DynaMut2')

+    parser.add_argument('--job_id', dest='job_id', type=str, help='Job identifier code generated upon submission', required=False, default=None)

+    args = parser.parse_args()

+    main(args)

Created by Yoochan Myung 2021-01-30

View revision

File mmcsm_na_single_prediction_post.py Added

+import argparse

+import requests

+import sys

+URL = "http://biosig.unimelb.edu.au/mmcsm_na/api/prediction_single"

+def main(args):

+    pdb_file = args.pdb_file

+    pdb_accession = args.pdb_accession

+    mutation_list = args.mutation_list

+    na_type = args.na_type

+    pdb_to_submit = {"pdb_file": pdb_file}

+    params = {

+        "pdb_accession": pdb_accession,

+        "mutation_list": mutation_list,

+        "na_type": na_type

+    }

+    req = requests.post(URL, files=pdb_to_submit, data=params)

+    print(req.json())

+    return True

+if __name__ == "__main__":

+    parser = argparse.ArgumentParser(description='Job submission for single prediction - mmCSM-NA')

+    parser.add_argument('--pdb_file', dest='pdb_file', type=argparse.FileType('r'), help='PDB file', required=False, default=None)

+    parser.add_argument('--pdb_accession', dest='pdb_accession', type=str, help='4-digit PDB code', required=False, default=None)

+    parser.add_argument('--mutation_list', dest='mutation_list', type=str, help='Mutation code AA_FROM RESIDUE_NUMBER AA_TO - e.g.: E346K')

+    parser.add_argument('--na_type', dest='na_type', type=str, help='Nucliec acid type')

+    args = parser.parse_args()

+    if args.pdb_accession == None and args.pdb_file == None:

+        print('usage: main.py [-h] [--pdb_file PDB_FILE] [--pdb_accession PDB_ACCESSION]')

+        print('[--mutation_list MUTATION_LIST] [--na_type NA_TYPE]')

+        print('main.py: error: missing arguments: Please provide --pdb_file or --pdb_accession')

+        sys.exit(1)

+    main(args)