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The configuration file is located in the program folder within the ImageJ plugins folder. For example:
C:\Program Files\ImageJ\plugins\Nuclear_Morphology_Analysis\config.ini
If the file is not present, it will be created when the program is started, with the default values. Any changes you make to the file will be loaded when you next run the program.
The following options can be set:
Key | Allowed Values | Effect |
---|---|---|
DEFAULT_NUCLEUS_TYPE |
ROUND RODENT_SPERM PIG_SPERM |
Set the default nucleus type to use in new analyses |
DEFAULT_DIR |
directory with backslashes escaped e.g. C:\\path\\to\\folder |
Sets the default folder for exporting data |
DEFAULT_IMAGE_SCALE |
A positive number e.g. 18.0 |
Sets the default scale for converting pixels to microns |
DEFAULT_COLOUR_SWATCH |
REGULAR_SWATCH ACCESSIBLE_SWATCH NO_SWATCH |
Sets the default colouring of datasets and segments |
FILL_CONSENSUS |
true false |
Sets the default value for the 'Fill consensus' checkbox in options |
DEFAULT_DISPLAY_SCALE |
PIXELS MICRONS |
Sets the default scale to display charts |
USE_ANTIALIASING |
true false |
Sets the default value for the 'Use anti-aliasing' checkbox in options |
REFOLD_OVERRIDE |
true false |
If true, the 'best-fit nucleus' method will always be used instead of the position averaging method |
Updated