Wiki

Clone wiki

Nuclear_Morphology / ui / Consensus panel

Consensus panel

The consensus panel displays available consensus nuclei for selected datasets. The chart will keep a fixed square aspect ratio. The height of the chart can be adjusted by dragging the slider between the top half of the window (log panel, populations panel, consensus panel) and the bottom half (tab panel); the chart will expand to fit.

The consensus nucleus is generated by sampling the coordinates of each vertically-oriented nucleus at equivalent proportions around the perimeter, and taking the median of the X and Y values at each point to be the consensus value at that point.

Consensus_panel.png

If a single dataset is selected, the display shows the segmented outline of the nucleus. If multiple datasets are selected, the outline and fill is shown in the dataset's preferred colour:

multiple_datasets.png

Adjusting the consensus nucleus

When a single dataset is selected, options are available to adjust the rotation and position of the consensus nucleus. In the figure above, the controls are shown on the right of the consensus panel.

Control Action
+r, -r rotate 1 degree clockwise or anti-clockwise about the centre of mass
! reset the rotation to use the landmarks in the ruleset for orientation
+x, -x, +y, -y adjust the position of the nucleus by one pixel in the given direction
! reset the centre of mass to position 0,0.

Rotation and offsets can also be applied in exact amounts using the options at the bottom of the right-click menu on the consensus chart: Rotate by.. and Offset...

Updated