miARma run issuse
Hi,
I am getting following error.
Can't locate CbBio/RNASeq/miARma.pm in @INC (you may need to install the CbBio::RNASeq::miARma module) (@INC contains: /home/caiy1/soft/lib/ /mnt/isilon/wang_lab/caiyou/miniconda2/lib/perl5/site_perl/5.22.0/x86_64-linux-thread-multi /mnt/isilon/wang_lab/caiyou/miniconda2/lib/perl5/site_perl/5.22.0 /mnt/isilon/wang_lab/caiyou/miniconda2/lib/perl5/5.22.0/x86_64-linux-thread-multi /mnt/isilon/wang_lab/caiyou/miniconda2/lib/perl5/5.22.0 .) at /home/caiy1/software/cbbio-miarma-e1674d108b24/miARma line 88. BEGIN failed--compilation aborted at /home/caiy1/software/cbbio-miarma-e1674d108b24/miARma line 88.
Comments (6)
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reporter Thanks, Eudardo,
I will try later, our service closed today morning.
I will tell you the feedback.
Have a good day!
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Hi again, did you manage to make it run ?
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- changed status to resolved
No news in a while
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Just for your information. I had the same issue and adding the full path as you said fixed the problem, Eduardo. A minor thing is that I use to use '~/' in my scripts to avoid having to change the /path/to/home/ as I move my scripts between platforms. Using '~/' in my *ini file didn't work, I had to use the absolute /path/to/home/
Thanks.
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Thanks Javier for your comment. You are complete right. In fact in the documentation we recommend to include the full path in the read_dir, outpout_dir and miARmaPath.
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Hi, It seems that miARma is installed in: /home/caiy1/software/cbbio-miarma-e1674d108b24/miARma, so miARma-libs should be on /home/caiy1/software/cbbio-miarma-e1674d108b24/miARma/lib/CbBio/RNASeq/ but I don't see this path in @INC. I recommend you to edit the ini file and write the full path to your miARma installation (/home/caiy1/software/cbbio-miarma-e1674d108b24/) in the miARmaPath variable
kind regards