miARma run issuse

[YOU CAI]

Hi,

I am getting following error.

Can't locate CbBio/RNASeq/miARma.pm in @INC (you may need to install the CbBio::RNASeq::miARma module) (@INC contains: /home/caiy1/soft/lib/ /mnt/isilon/wang_lab/caiyou/miniconda2/lib/perl5/site_perl/5.22.0/x86_64-linux-thread-multi /mnt/isilon/wang_lab/caiyou/miniconda2/lib/perl5/site_perl/5.22.0 /mnt/isilon/wang_lab/caiyou/miniconda2/lib/perl5/5.22.0/x86_64-linux-thread-multi /mnt/isilon/wang_lab/caiyou/miniconda2/lib/perl5/5.22.0 .) at /home/caiy1/software/cbbio-miarma-e1674d108b24/miARma line 88. BEGIN failed--compilation aborted at /home/caiy1/software/cbbio-miarma-e1674d108b24/miARma line 88.

[Eduardo Andres Leon]

Hi, It seems that miARma is installed in: /home/caiy1/software/cbbio-miarma-e1674d108b24/miARma, so miARma-libs should be on /home/caiy1/software/cbbio-miarma-e1674d108b24/miARma/lib/CbBio/RNASeq/ but I don't see this path in @INC. I recommend you to edit the ini file and write the full path to your miARma installation (/home/caiy1/software/cbbio-miarma-e1674d108b24/) in the miARmaPath variable

kind regards

[YOU CAI]

Thanks, Eudardo,

I will try later, our service closed today morning.

I will tell you the feedback.

Have a good day!

[Eduardo Andres Leon]

Hi again, did you manage to make it run ?

[Eduardo Andres Leon]

No news in a while

[Javier Diaz]

Just for your information. I had the same issue and adding the full path as you said fixed the problem, Eduardo. A minor thing is that I use to use '~/' in my scripts to avoid having to change the /path/to/home/ as I move my scripts between platforms. Using '~/' in my *ini file didn't work, I had to use the absolute /path/to/home/

Thanks.

[Eduardo Andres Leon]

Thanks Javier for your comment. You are complete right. In fact in the documentation we recommend to include the full path in the read_dir, outpout_dir and miARmaPath.