Definition of tophat_multihits parameter for documentation, allowed values, default value,...
Issue #30
resolved
In example 2.2 appears as #Max # mismatches in seed alignment in bowtie analysis (0-1) which is the definition of bowtiemiss parameter.
Comments (3)
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reporter -
Final read alignments having more than these many mismatches are discarded. The default is 2.
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The same with:
#Length of seed substrings in bowtie analysis (>3, <32) read_mismatches=2
and bowtieleng parameter