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Novel miRNA target prediction

Issue #64 resolved
Manoharan created an issue

Hi Eduardo,

Is it possible to find novel miRNA sequence targets form miRGate. If not can you suggest a tool that can do this.

Thanks,

Comments (2)

  1. Eduardo Andres Leon

    Dear Manoharan,

    miRGate “only” contains pre-calculated targets from 3’ UTR obtained from EnsEMBL. So it is not possible to calculate targets by providing a sequence.

    The 5 algorithms inside miRGate are binaries that can be obtained from the own method’s webpage, so you can download it and execute it. Bit if you are looking for a faster solution, for example RNAHybrid, allow you to paste your sequence and obtain possible targets :

    https://bibiserv2.cebitec.uni-bielefeld.de/rnahybrid?id=rnahybrid_view_submission

    Regards

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