DEgene expression

[Umair Seemab]

I am trying to analyse the DE gene and its giving me this error.

[Fri Apr 28 16:31:37 2017] Starting a miARma analysis for miRNA [Fri Apr 28 16:31:37 2017] Checking provided parameters for: DEAnalysis. [Fri Apr 28 16:31:37 2017] Checking General-output_dir parameter ... Exists! [Fri Apr 28 16:31:37 2017] The folder specified in (output_dir=/media/sf_Share_folder/Results/Known_miRNA_results/results/) already exists. [Fri Apr 28 16:31:37 2017] Wait 5 seconds to overwrite the folder. Cancel otherwise: 0 [Fri Apr 28 16:31:43 2017] Continue. [Fri Apr 28 16:31:43 2017] All parameters are correct. [Fri Apr 28 16:31:43 2017] Starting a differential expression analysis using EdgeR software(s) Problem while running this R command: print(resultsfiles)

Error: print(resultsfiles) : object 'resultsfiles' not found Execution halted

[Eduardo Andres Leon]

Dear Umair, Thanks for using miARma.

In order to help you, I’ll need the log files that are created in your result_folder (miARma_log and miARma_stat files).

also I recommend you to use miArma 1.6.1 which is the latest version

Regards

[Umair Seemab]

Hi,

I can only find the 1.5 version. https://sourceforge.net/projects/miarma/ could you send me the link from where I can download 1.6 version.

[Eduardo Andres Leon]

Hi, You can find the latest version here, in the bitbucket:

https://bitbucket.org/cbbio/miarma/get/master.tar.bz2

Take a look at the source section in the installation miARma-Seq web page:

http://miarmaseq.cbbio.es/installation http://miarmaseq.cbbio.es/installation

Regards

[Umair Seemab]

These are all the log files created during different steps.

[Umair Seemab]

These are those log files when I ran the latest version and its giving the same error.

[ruchi]

Hi!!! I was facing the same problem while running DEgene expression. Then I checked for the R package is not there in my PC. I installed it, and problem solved. I suggest you to check for the same.