Use miARmaSeq for only DE analysis and target prediction

[Shuklasidd]

Hi Eduardo,

Quick question: Can one use miARma seq for only DEanalysis and target prediction, if I already have a table of miRNA mapped reads?

We have been using a custom miRNA mapping method involving ncbi blast and counting of mapped reads (mainly because our library prep method is different). If I could use that results file directly for DE analysis using EdgeR and then predict targets, that would save me time on the upstream steps which are not necessarily needed for my analysis. Please let me know.

Thanks, Sid

[Eduardo Andres Leon]

Hi, Of course you can. Could you create an ini file with your details in [General], [DEAnalysis] ? Then I'll explain you how to proceed