- changed status to resolved
IndexError
Hi, I get an index error and I am not sure what I have to do to solve it. This is the error I get:
lsa_compute (rev: 506cc2c) - copyright Li Charlie Xia, lixia@stanford.edu
firstData factorNum, repNum, spotNum = 189, 2, 7
secondData factorNum, repNum, spotNum = 189, 2, 7
calculating 35721 pairwise local similarity scores...
inside applyAnalysis...
computing p_table with Rmax= 10
pairwise calculation...
Traceback (most recent call last):
File "/services/tools/anaconda2/4.0.0/bin/lsa_compute", line 11, in <module>
load_entry_point('lsa==1.0.2', 'console_scripts', 'lsa_compute')()
File "/services/tools/anaconda2/4.0.0/lib/python2.7/site-packages/lsa/lsa_compute.py", line 335, in main
secondFactorLabels=secondFactorLabels, qvalueMethod=qvalueMethod, progressive=progressive)
File "/services/tools/anaconda2/4.0.0/lib/python2.7/site-packages/lsa/lsalib.py", line 1153, in applyAnalysis
bootCI, bootNum, fTransform, zNormalize, trendThresh) # do Bootstrap CI
File "/services/tools/anaconda2/4.0.0/lib/python2.7/site-packages/lsa/lsalib.py", line 334, in bootstrapCI
return ( BS_mean, BS_set[np.floor(bootNuma1)-1], BS_set[np.ceil(bootNuma2)-1] )
IndexError: only integers, slices (:
), ellipsis (...
), numpy.newaxis (None
) and integer or boolean arrays are valid indices
Is there a problem with my indices for the factors? How can I fix this?
Comments (4)
-
repo owner -
repo owner numpy behavior change caused problem. I fixed it in latest master.
-
repo owner - changed status to closed
-
repo owner - changed status to resolved
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fix issue
#18→ <<cset 472af71b0c78>>