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Docker
An example dockerfile for building Docker image
There is a dockerfile for building Docker image: Dockerfile
Install
A Ubuntu Installation Log from Scratch
See the record of all commands to setup SWAN from scratch machine: example/ubuntu.action.log
A CentOS Installation Log from Scratch
See the record of all commands to setup SWAN from scratch machine: example/centos.action.log
A OSX macports Installation Log from Scratch
See the record of all commands to setup SWAN from scratch machine: example/macports.action.log
A OSX homebrew Installation Log from Scratch
See the record of all commands to setup SWAN from scratch machine: example/homebrew.action.log
Usage
A simple example run for one sample
There is a single.sh script for demo single sample analysis: test/single.sh
A simple example run for paired samples
There is a paired.sh script for demo paired sample analysis: test/paired.sh
Updated