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Welcome
This site hosts a selection of training material related to Biomolecular Simulation.
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An Introduction to Simulation Analysis with MDTraj. This tutorial provides an introduction to interactive MD simulation analysis using iPython (Jupiter) notebooks, with numpy, matplotlib and MDTraj.
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The Analysis of MD Simulation Data. This tutorial provides a basic introduction to methods for the evaluation of sampling and convergence in MD simulations. In particular, methods based on RMSD analysis are compared with those that use PCA.
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