Proble running iDiffir

Issue #2 new
Anonymous created an issue

Hi,

I am a bench researcher trying to identify intron retention events in my rna-seq experiments (Arabidopsis mutant versus wild-type).

I have correctly installed all the required packages and the iDiffir.
I got the depths and when I type: idiffir.py -l Mutant Wildtype -o my_result TAIR10_GFF3_genes.gff mt_rep1_depths wt_rep1_depths

I get this:
root@gdaras-Z68X-UD3P-B3:/home/gdaras/Επιφάνεια εργασίας/iDiffIR_v0.3.1# idiffir.py -l Mutant Wildtype -o my_result TAIR10_GFF3_genes.gff mt_rep1_depths wt_rep1_depths
Traceback (most recent call last):
File "/usr/local/bin/idiffir.py", line 22, in <module>
from iDiffIR.Plot import *
File "/usr/local/lib/python2.7/dist-packages/iDiffIR/Plot.py", line 114
ofile.write('\t'.join(['geneID', 'lowExonCoords',
^
IndentationError: expected an indented block

Any advice? Your help will be really appreciated!

Gerasimos Daras, PhD
Agricultural University of Athens
Laboratory of Molecular Biology
Athens, Greece

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