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assigned issue to
TimeSeriesHDF5 should be used in auto-adaptive solver
The auto-adaptive demos report an error in parallel ("Storing of data to time series is not yet working in parallel.").
Time series data is now supported in parallel (via HDF5) and mesh parallel mesh refinement is also supported, so these demos should work in parallel.
Comments (17)
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reporter - edited description
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I tried switching in TimeSeriesHDF5, which didn't throw any errors, but now this happens in the auto-adaptive-navier-stokes python demo:
*** Error: Unable to perform operation in parallel. *** Reason: Extrapolation of functions is not yet working in parallel.
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- changed milestone to 1.5
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- changed milestone to 1.6
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- changed title to TimeSeriesHDF5 should be used in auto-adaptive solver
- changed version to 1.5
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- changed status to resolved
Fix issue
#102: TimeSeriesHDF5 should be used in auto-adaptive solver→ <<cset 1ba428b083dc>>
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TimeSeriesHDF5 now used but demos still throw error in parallel since extrapolation is not implemented in parallel. This is a separate issue that requires some thought.
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reporter Does this mean we can remove
BinaryFile
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And then remove
TimeSeries
? Yes, that would work for me, but perhaps it should be asked on the mailing list. Others may depend on it (but could likely be convinced to switch to HDF5). -
reporter Even if
TimeSeries
works, it's not good to have duplicate functionality. Let's at least deprecateBinaryFile
andTimeSeries
. If there are no objections on the mailing list we can just remove it rather than deprecate. -
ok.
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Revert "Fix issue
#102: TimeSeriesHDF5 should be used in auto-adaptive solver"This reverts commit 1ba428b083dcb3de8e2c2e7033644aafc34d51b2.
→ <<cset bda57b950b86>>
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- changed status to open
I reverted 1ba428b083dcb3de8e2c2e7033644aafc34d51b2 in next by bda57b950b86736bf90d7c5efaa774ae414700cc because it does not compile, see http://fenicsproject.org:8010/builders/dolfin-next-full-mpich/builds/1324/steps/compile/logs/stdio
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Looks like missing #ifdef for when HDF5 is not installed.
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- changed status to resolved
Should be fixed now.
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- removed milestone
Removing milestone: 1.6 (automated comment)
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