KMA -Sparse hangs when run against non-Sparse database

[Marco van Zwetselaar]

When I invoke kma -Sparse against a database that was not indexed with kma_index -Sparse, kma correctly reports DB needs to sparse indexed, to run a sparse mapping. but then does not terminate.

This is with a plain vanilla invocation like kma -i test.fa.gz -o /tmp/results -t_db ./bacteria -Sparse

[ptlcc]

Hi Marco

I have tried to reproduce the error on Mac and Linux, but without luck.
Can we take a look together start of next week.

Best,
Philip