-s 'Mycobacterium tuberculosis' error

[Kaixin h]

Hi ,

Come across an error for two samples among hundreds I tried:

‌

Traceback (most recent call last):
File "run_resfinder.py", line 486, in <module>
id=sample_name)
File "/home/user/resfinder/cge/pointfinder.py", line 135, in old_results_to_standard_output
db_name, gene_name, db['mis_matches'], True, db)
File "/home/user/resfinder/cge/pointfinder.py", line 1489, in get_mutations
mut_dict = PointFinder.mutstr2mutdict(mut_name)
File "/home/user/resfinder/cge/pointfinder.py", line 1428, in mutstr2mutdict
out_dict["ref_aa"] = sub_match.group(1).lower()
AttributeError: 'NoneType' object has no attribute 'group'

[CGE Helpdesk]

Dear Kaixin,

Thank you for your interest in the ResFinder service and letting us know about this error.

Could you please submit your job(s) using our webserver https://cge.cbs.dtu.dk/services/ResFinder/ and write the jobid(s) to our Helpdesk email [e-mail] tagging it with the related issue number #48. This will make it easier for us to look into.

Thanks in advance.

Best regards,

Karen, CGE Helpdesk

[Kaixin h]

Dear Karen,

Sent. Thanks!

[CGE Helpdesk]

Dear Kaixin,

The bug should be fixed now. Please update your local version and try run your data again. Thank you for reporting this issue to us.

Best,
Karen, CGE Helpdesk

[Kaixin h]

Hi Karen, No errors now . Thanks!